Full information on isolate FRC1461 (id:2286)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 2286
- isolate
- FRC1461
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- Mayotte
- continent
- Africa
- state or locality
- Mayotte
- travel history
- Not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 7 updates show details
- embargo history
- show details
- date entered
- 2022-06-23
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 44
- total length
- 2,364,206 bp
- max length
- 307,901 bp
- mean length
- 53,732 bp
- N50
- 142,063
- L50
- 6
- N90
- 31,425
- L90
- 19
- N95
- 21,763
- L95
- 23
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,304
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_1_1_1_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_1
- Sublineage
- SL356
- Clonal group
- ClG10106
- Genetic cluster
- GC723
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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