Full information on isolate FRC1584 (id:2280)
Projects
This isolate is a member of the following project:
- cgMLST C. ulcerans set-up study
- Isolates included in the cgMLST study for C. ulcerans and C. ramonii (publicly-available genomes and some isolates from the French NRC)
Provenance/primary metadata
- id
- 2280
- isolate
- FRC1584
- species
- C. ulcerans
- biovar
- Unknown
- tox gene PCR
- Negative
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Cat
- source
- Nasal
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 5 updates show details
- date entered
- 2022-06-16
- datestamp
- 2025-04-30
Sequence bin
- method
- Unknown
- contigs
- 18
- total length
- 2,581,974 bp
- max length
- 448,166 bp
- mean length
- 143,443 bp
- N50
- 306,378
- L50
- 4
- N90
- 92,545
- L90
- 9
- N95
- 45,280
- L95
- 10
- %GC
- 53.44
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,627
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 3 (64 isolates) | CG: 339 |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 2 (64 isolates) | SL: 339 |
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 3 (64 isolates) | CG: 339 |
| Genomic_cluster_ulcerans | cgMLST_ulcerans | Single-linkage | 25 | experimental | 246 (1 isolate) | |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 2 (64 isolates) | SL: 339 |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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