Full information on isolate DIFT102 (id:2255)
Projects
This isolate is a member of the following project:
- cgMLST C. ulcerans set-up study
- Isolates included in the cgMLST study for C. ulcerans and C. ramonii (publicly-available genomes and some isolates from the French NRC)
Provenance/primary metadata
- id
- 2255
- isolate
- DIFT102
- species
- C. ulcerans
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2019
- city
- 4452
- country
- Belgium
- continent
- Europe
- travel history
- None
- host
- Human
- comments
- This assembly has been replaced by one of better quality, under id 5907.
- sender
- Helena Martini
- curator
- Helena Martini, Laboratorium Microbiologie, Universitair Ziekenhuis Brussel, Belgium (E-mail: Helena.Martini@uzbrussel.be)
- update history
- 4 updates show details
- date entered
- 2023-07-11
- datestamp
- 2024-11-18
Sequence bin
- method
- Illumina
- contigs
- 466
- total length
- 2,645,628 bp
- max length
- 824,542 bp
- mean length
- 5,678 bp
- N50
- 807,066
- L50
- 2
- N90
- 135,496
- L90
- 5
- N95
- 431
- L95
- 131
- %GC
- 54.23
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,633
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 1 (116 isolates) | CG: 331 |
| Genomic_cluster_ulcerans | cgMLST_ulcerans | Single-linkage | 25 | experimental | 197 (3 isolates) | |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 1 (305 isolates) | SL: 331 |
| Clonal_group_ulcerans | cgMLST_ulcerans | Single-linkage | 194 | experimental | 1 (116 isolates) | CG: 331 |
| Genomic_cluster_ulcerans | cgMLST_ulcerans | Single-linkage | 25 | experimental | 197 (3 isolates) | |
| Sublineage_ulcerans | cgMLST_ulcerans | Single-linkage | 940 | experimental | 1 (305 isolates) | SL: 331 |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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