Full information on isolate FRC1425 (id:2238)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 2238
- isolate
- FRC1425
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 6 updates show details
- embargo history
- show details
- date entered
- 2022-04-04
- datestamp
- 2025-04-30
Sequence bin
- method
- Unknown
- contigs
- 37
- total length
- 2,444,201 bp
- max length
- 347,614 bp
- mean length
- 66,060 bp
- N50
- 169,536
- L50
- 5
- N90
- 56,067
- L90
- 14
- N95
- 25,964
- L95
- 18
- %GC
- 53.70
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,292
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_113_0_1_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL511
- Clonal group
- ClG511
- Genetic cluster
- GC549
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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