Full information on isolate FRC1417 (id:2235)
Projects
This isolate is a member of the following project:
- Hennart_diphtOscan_2023_France_2022
- Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Provenance/primary metadata
- id
- 2235
- isolate
- FRC1417
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2022
- country
- French Guiana
- continent
- South America
- state or locality
- French Guiana
- travel history
- Not documented
- host
- Human
- source
- Ear
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 8 updates show details
- embargo history
- show details
- date entered
- 2022-04-04
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 36
- total length
- 2,409,757 bp
- max length
- 455,925 bp
- mean length
- 66,938 bp
- N50
- 147,617
- L50
- 4
- N90
- 37,154
- L90
- 15
- N95
- 24,900
- L95
- 19
- %GC
- 53.53
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,287
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_52_0_1_0_1_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL536
- Clonal group
- ClG536
- Genetic cluster
- GC39
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 178 (13 isolates) | SL: 536 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 295 (11 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 178 (13 isolates) | SL: 536 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 295 (11 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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