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Full information on isolate FRC1367 (id:2231)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_France_2022: Human diphtheria isolates from the French NRC, deduplicated, 2022. Published in Peer Community In, Hennart et al., 2023 https://peercommunityjournal.org/articles/10.24072/pcjournal.307/)
Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id: 2231
isolate: FRC1367
species: C. diphtheriae
biovar: Mitis
tox gene PCR: Negative
isolation year: 2022
country: France
continent: Europe
state or locality: Mainland France
travel history: None
host: Human
source: Cutaneous
infection or disease: Wound
sender: Virginie Passet, Institut Pasteur, France
curator: Auto Tagger
update history: 14 updates show details
embargo history: show details
date entered: 2022-03-14
datestamp: 2025-07-18

Sequence bin

method: Unknown
contigs: 57
total length: 2,409,478 bp
max length: 398,555 bp
mean length: 42,272 bp
N50: 115,446
L50: 7
N90: 23,368
L90: 24
N95: 14,810
L95: 30
%GC: 53.65
Ns: 0
gaps: 0
loci tagged: 1,297

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme: cgMLST
LIN code: 0_0_158_1_0_1_0_0_0_0
Species: C. diphtheriae
Lineage: 0_0
Sublineage: SL6
Clonal group: ClG6
Genetic cluster: GC217

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Prefix	Threshold	Matching isolates
0_0_158_1_0_1	8	1
0_0_158_1_0_1_0	4	1
0_0_158_1_0_1_0_0	2	1
0_0_158_1_0_1_0_0_0	1	1
0_0_158_1_0_1_0_0_0_0	0	1
0	1220	2380
0_0	1035	2162
0_0_158	500	3
0_0_158_1	55	2
0_0_158_1_0	25	2
0_0_158_1_0_1	8	1
0_0_158_1_0_1_0	4	1
0_0_158_1_0_1_0_0	2	1
0_0_158_1_0_1_0_0_0	1	1
0_0_158_1_0_1_0_0_0_0	0	1

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	223 (3 isolates)	SL: 6
Genomic_cluster	cgMLST	Single-linkage	25	experimental	473 (2 isolates)
Sublineage	cgMLST	Single-linkage	500	experimental	223 (3 isolates)	SL: 6
Genomic_cluster	cgMLST	Single-linkage	25	experimental	473 (2 isolates)

Schemes and loci

All loci
- Classical schemes
- Other schemes
  - PBP
  - spuA_island

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Tools

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