Full information on isolate 74 (id:213)
Projects
Provenance/primary metadata
- id
- 213
- isolate
- 74
- alias
- S27
- species
- C. diphtheriae
- biovar
- Mitis
- isolation year
- 1996
- city
- Mogilev
- country
- Belarus
- continent
- Europe
- travel history
- Not documented
- host
- Human
- infection or disease
- asymptomatic
- accession number
- GCA_002202345.1
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1321 updates show details
- embargo history
- show details
- date entered
- 2017-12-19
- datestamp
- 2025-07-18
Publications (2)
- Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 64
- total length
- 2,396,017 bp
- max length
- 157,008 bp
- mean length
- 37,438 bp
- N50
- 99,649
- L50
- 11
- N90
- 21,461
- L90
- 32
- N95
- 15,775
- L95
- 38
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,371
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_9_2_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG5
- Genetic cluster
- GC937
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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