Full information on isolate 209 (id:210)
Projects
Provenance/primary metadata
- id
- 210
- isolate
- 209
- alias
- ASM220332v1
- species
- C. diphtheriae
- isolation year
- 1996
- city
- Minsk
- country
- Belarus
- continent
- Europe
- travel history
- Not documented
- host
- Human
- accession number
- GCA_002203325.1
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1313 updates show details
- embargo history
- show details
- date entered
- 2017-12-19
- datestamp
- 2025-07-18
Publications (2)
- Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 63
- total length
- 2,392,456 bp
- max length
- 186,885 bp
- mean length
- 37,976 bp
- N50
- 86,183
- L50
- 10
- N90
- 25,908
- L90
- 30
- N95
- 15,254
- L95
- 37
- %GC
- 53.61
- Ns
- 145
- gaps
- 9
- loci tagged
- 1,363
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_3_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG741
- Genetic cluster
- GC556
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: