Full information on isolate 1480 (id:208)
Projects
Provenance/primary metadata
- id
- 208
- isolate
- 1480
- alias
- S45
- species
- C. diphtheriae
- biovar
- Gravis
- isolation year
- 1999
- city
- Gomel
- country
- Belarus
- continent
- Europe
- travel history
- Not documented
- host
- Human
- infection or disease
- diphtheria
- accession number
- GCA_002202525.1
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1297 updates show details
- embargo history
- show details
- date entered
- 2017-12-19
- datestamp
- 2025-07-17
Publications (2)
- Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 90
- total length
- 2,436,997 bp
- max length
- 183,547 bp
- mean length
- 27,078 bp
- N50
- 69,142
- L50
- 11
- N90
- 13,666
- L90
- 40
- N95
- 7,896
- L95
- 52
- %GC
- 53.47
- Ns
- 13
- gaps
- 1
- loci tagged
- 1,379
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_0_0_1_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL8
- Clonal group
- ClG8
- Genetic cluster
- GC565
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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