Full information on isolate 768a (id:197)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
197
isolate
768a
alias
ASM220100v1
species
C. diphtheriae
isolation year
1997
city
Brest
country
Belarus
continent
Europe
travel history
Not documented
host
Human
source
sore throat
accession number
GCA_002201005.1
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
1322 updates show details
embargo history
show details
date entered
2017-12-19
datestamp
2025-07-02

Publications (2)

  • Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
54
total length
2,407,512 bp
max length
261,047 bp
mean length
44,584 bp
N50
124,873
L50
8
N90
25,895
L90
22
N95
19,456
L95
27
%GC
53.61
Ns
0
gaps
0
loci tagged
1,379

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_197_11_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL5
Clonal group
ClG728
Genetic cluster
GC580

Show all thresholds

PrefixThresholdMatching isolates
0_0_197_11_0_081
0_0_197_11_0_0_041
0_0_197_11_0_0_0_021
0_0_197_11_0_0_0_0_011
0_0_197_11_0_0_0_0_0_001
012202380
0_010352162
0_0_19750055
0_0_197_11551
0_0_197_11_0251
0_0_197_11_0_081
0_0_197_11_0_0_041
0_0_197_11_0_0_0_021
0_0_197_11_0_0_0_0_011
0_0_197_11_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental143 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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