Full information on isolate 768a (id:197)
Projects
Provenance/primary metadata
- id
- 197
- isolate
- 768a
- alias
- ASM220100v1
- species
- C. diphtheriae
- isolation year
- 1997
- city
- Brest
- country
- Belarus
- continent
- Europe
- travel history
- Not documented
- host
- Human
- source
- sore throat
- accession number
- GCA_002201005.1
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1322 updates show details
- embargo history
- show details
- date entered
- 2017-12-19
- datestamp
- 2025-07-02
Publications (2)
- Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 54
- total length
- 2,407,512 bp
- max length
- 261,047 bp
- mean length
- 44,584 bp
- N50
- 124,873
- L50
- 8
- N90
- 25,895
- L90
- 22
- N95
- 19,456
- L95
- 27
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,379
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_11_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG728
- Genetic cluster
- GC580
| Prefix | Threshold | Matching isolates |
|---|---|---|
| 0_0_197_11_0_0 | 8 | 1 |
| 0_0_197_11_0_0_0 | 4 | 1 |
| 0_0_197_11_0_0_0_0 | 2 | 1 |
| 0_0_197_11_0_0_0_0_0 | 1 | 1 |
| 0_0_197_11_0_0_0_0_0_0 | 0 | 1 |
| 0 | 1220 | 2380 |
| 0_0 | 1035 | 2162 |
| 0_0_197 | 500 | 55 |
| 0_0_197_11 | 55 | 1 |
| 0_0_197_11_0 | 25 | 1 |
| 0_0_197_11_0_0 | 8 | 1 |
| 0_0_197_11_0_0_0 | 4 | 1 |
| 0_0_197_11_0_0_0_0 | 2 | 1 |
| 0_0_197_11_0_0_0_0_0 | 1 | 1 |
| 0_0_197_11_0_0_0_0_0_0 | 0 | 1 |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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