Full information on isolate C7beta (id:19)
Projects
Provenance/primary metadata
- id
- 19
- isolate
- C7beta
- alias
- ATCC27012
- species
- C. diphtheriae
- tox gene PCR
- Positive
- isolation year
- 1954
- country
- Unknown
- travel history
- Not documented
- host
- Not documented
- comments
- Derivative of avirulent C7 strain
- accession number
- CP003210
- epidemic cluster
- cryptic_2
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1330 updates show details
- embargo history
- show details
- date entered
- 2017-02-07
- datestamp
- 2025-07-18
Publications (2)
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata R, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A (2012). Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia. J Bacteriol 194:3199-215
Sequence bin
- method
- Unknown
- contigs
- 1
- length
- 2,499,189 bp
- %GC
- 53.50
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,403
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_168_0_0_0_0_0_2_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL26
- Clonal group
- ClG26
- Genetic cluster
- GC4
| Prefix | Threshold | Matching isolates |
|---|---|---|
| 0_0_168_0_0_0 | 8 | 48 |
| 0_0_168_0_0_0_0 | 4 | 47 |
| 0_0_168_0_0_0_0_0 | 2 | 47 |
| 0_0_168_0_0_0_0_0_2 | 1 | 1 |
| 0_0_168_0_0_0_0_0_2_0 | 0 | 1 |
| 0 | 1220 | 2380 |
| 0_0 | 1035 | 2162 |
| 0_0_168 | 500 | 50 |
| 0_0_168_0 | 55 | 49 |
| 0_0_168_0_0 | 25 | 49 |
| 0_0_168_0_0_0 | 8 | 48 |
| 0_0_168_0_0_0_0 | 4 | 47 |
| 0_0_168_0_0_0_0_0 | 2 | 47 |
| 0_0_168_0_0_0_0_0_2 | 1 | 1 |
| 0_0_168_0_0_0_0_0_2_0 | 0 | 1 |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 4 (50 isolates) | SL: 26 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 4 (49 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 4 (50 isolates) | SL: 26 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 4 (49 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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