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Full information on isolate rz656 (id:184)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
SL453 study in 2022
See Arcari et al. Microbial Genomics 2023 (IDs 2315 and 2336 were added after publication)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
184
isolate
rz656
alias
ASM211512v1
species
C. diphtheriae
isolation year
2016
city
Tawau
country
Malaysia
continent
Asia
travel history
Not documented
host
Human
source
throat swab
infection or disease
diphtheria
accession number
GCA_002115125.1
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
1315 updates show details
date entered
2017-12-19
datestamp
2025-07-18

Publications (2)

  • Ahmad N, Hii SY, Mohd Khalid MK, Abd Wahab MA, Hashim R, Tang SN, Liow YL, Hamzah H, Dahalan NA, Seradja V (2017). First Draft Genome Sequences of Malaysian Clinical Isolates of Corynebacterium diphtheriae. Genome Announc 5:
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121

Sequence bin

method
Unknown
contigs
50
total length
2,406,427 bp
max length
380,720 bp
mean length
48,129 bp
N50
139,182
L50
5
N90
30,547
L90
16
N95
21,163
L95
21
%GC
53.52
Ns
0
gaps
0
loci tagged
1,384

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_165_10_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL40
Clonal group
ClG406
Genetic cluster
GC407

Show all thresholds

PrefixThresholdMatching isolates
0_0_165_10_0_081
0_0_165_10_0_0_041
0_0_165_10_0_0_0_021
0_0_165_10_0_0_0_0_011
0_0_165_10_0_0_0_0_0_001
012202380
0_010352162
0_0_16550035
0_0_165_10551
0_0_165_10_0251
0_0_165_10_0_081
0_0_165_10_0_0_041
0_0_165_10_0_0_0_021
0_0_165_10_0_0_0_0_011
0_0_165_10_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
Genomic_clustercgMLSTSingle-linkage25experimental134 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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