Full information on isolate FRC0316 (id:170)
Projects (3)
This isolate is a member of the following projects:
ResistanceGenomics public
Hennart et al. 247 isolates dataset
247 isolates
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
DelgadoBlas_LINcodes_2025 public
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.
1,665 isolates
Provenance/primary metadata
- id
- 170
- isolate
- FRC0316
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2015
- country
- Réunion
- continent
- Africa
- state or locality
- La Reunion
- travel history
- Not documented
- host
- Human
- source
- broncho-tracheal aspiration
- infection or disease
- Not documented
- accession number
- ERS4330910
- sender
- Melody Dazas, Institut Pasteur
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 1326 updates show details
- date entered
- 2017-05-02
- datestamp
- 2025-04-30
Publication (1)
- Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107
Sequence bin
- method
- Illumina
- contigs
- 36
- total length
- 2,411,891 bp
- max length
- 286,065 bp
- mean length
- 66,997 bp
- N50
- 162,113
- L50
- 6
- N90
- 49,087
- L90
- 15
- N95
- 24,543
- L95
- 20
- %GC
- 53.56
- Ns
- 10
- gaps
- 1
- loci tagged
- 1,397
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_180_0_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL95
- Clonal group
- ClG95
- Genetic cluster
- GC552
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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