Full information on isolate FRC0213 (id:168)
Projects (3)
This isolate is a member of the following projects:
ResistanceGenomics public
Hennart et al. 247 isolates dataset
247 isolates
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
DelgadoBlas_LINcodes_2025 public
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.
1,665 isolates
Provenance/primary metadata
- id
- 168
- isolate
- FRC0213
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2014
- country
- Mayotte
- continent
- Africa
- state or locality
- Mayotte
- travel history
- Not documented
- host
- Human
- source
- Not documented
- infection or disease
- Wound under toe nail, abscess
- accession number
- ERS4330893
- sender
- Melody Dazas, Institut Pasteur
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 1335 updates show details
- date entered
- 2017-05-02
- datestamp
- 2025-04-30
Publication (1)
- Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107
Sequence bin
- method
- Illumina
- contigs
- 40
- total length
- 2,376,741 bp
- max length
- 270,517 bp
- mean length
- 59,419 bp
- N50
- 132,062
- L50
- 7
- N90
- 32,285
- L90
- 18
- N95
- 22,968
- L95
- 22
- %GC
- 53.56
- Ns
- 40
- gaps
- 4
- loci tagged
- 1,400
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_180_0_1_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL95
- Clonal group
- ClG95
- Genetic cluster
- GC734
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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