Full information on isolate BH8 (id:16)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
16
isolate
BH8
alias
ASM24193v1
species
C. diphtheriae
tox gene PCR
Negative
country
Brazil
continent
South America
travel history
Not documented
host
Human
resistance info
Multidrug resistant
accession number
CP003209
sender
Melody Dazas, Institut Pasteur
curator
Mélanie Hennart, Institut Pasteur, France (E-mail: melanie.hennart@orange.fr)
update history
1025 updates show details
embargo history
show details
date entered
2017-02-07
datestamp
2023-01-24

Publications (2)

  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
  • Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata R, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A (2012). Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia. J Bacteriol 194:3199-215

Sequence bin

method
Unknown
contigs
1
length
2,485,519 bp
%GC
53.56
Ns
0
gaps
0
loci tagged
1,328

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_237_0_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL172
Clonal group
ClG172
Genetic cluster
GC863

Show all thresholds

PrefixThresholdMatching isolates
0_0_237_0_0_081
0_0_237_0_0_0_041
0_0_237_0_0_0_0_021
0_0_237_0_0_0_0_0_011
0_0_237_0_0_0_0_0_0_001
012202380
0_010352162
0_0_2375001
0_0_237_0551
0_0_237_0_0251
0_0_237_0_0_081
0_0_237_0_0_0_041
0_0_237_0_0_0_0_021
0_0_237_0_0_0_0_0_011
0_0_237_0_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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