Full information on isolate FRC1868 (id:1596)
Projects
This isolate is a member of the following project:
- 2023_EuropeanWideReemergence_followup
- EU isolates 2023 (Hoefer et al.)
Provenance/primary metadata
- id
- 1596
- isolate
- FRC1868
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2023
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Madagascar
- host
- Human
- source
- Cutaneous and soft tissue
- infection or disease
- Cutaneous and soft tissue infection
- other source info
- Wound
- accession number
- ERR13801622
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 8 updates show details
- embargo history
- show details
- date entered
- 2023-03-27
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 49
- total length
- 2,490,425 bp
- max length
- 438,926 bp
- mean length
- 50,825 bp
- N50
- 147,468
- L50
- 6
- N90
- 30,166
- L90
- 21
- N95
- 25,841
- L95
- 25
- %GC
- 53.64
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,312
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_130_2_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL421
- Clonal group
- ClG10007
- Genetic cluster
- GC397
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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