Full information on isolate NCTC3529 (id:1515)
Projects
Provenance/primary metadata
- id
- 1515
- isolate
- NCTC3529
- species
- C. diphtheriae
- tox gene PCR
- Positive
- country
- Unknown
- travel history
- Not documented
- host
- Not documented
- accession number
- LR134538.1
- sender
- Julien Guglielmini, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2022-01-14
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 1
- length
- 2,528,716 bp
- %GC
- 53.57
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,313
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_206_1_0_0_1_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL452
- Clonal group
- ClG452
- Genetic cluster
- GC82
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 22 (4 isolates) | SL: 452 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 22 (4 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 22 (4 isolates) | SL: 452 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 22 (4 isolates) |
Schemes and loci
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