Full information on isolate FRC1293 (id:1511)
Projects
Provenance/primary metadata
- id
- 1511
- isolate
- FRC1293
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2021
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Sri Lanka
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- embargo history
- show details
- date entered
- 2022-01-03
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 33
- total length
- 2,530,441 bp
- max length
- 472,553 bp
- mean length
- 76,681 bp
- N50
- 254,392
- L50
- 4
- N90
- 35,542
- L90
- 14
- N95
- 21,394
- L95
- 19
- %GC
- 53.54
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,311
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_209_4_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL295
- Clonal group
- ClG809
- Genetic cluster
- GC605
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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