Full information on isolate FRC1220 (id:1500)
Projects
Provenance/primary metadata
- id
- 1500
- isolate
- FRC1220
- species
- C. diphtheriae
- tox gene PCR
- Negative
- isolation year
- 2021
- country
- French Guiana
- continent
- South America
- state or locality
- French Guiana
- travel history
- None
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 11 updates show details
- embargo history
- show details
- date entered
- 2021-11-22
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 49
- total length
- 2,398,271 bp
- max length
- 404,277 bp
- mean length
- 48,945 bp
- N50
- 122,852
- L50
- 6
- N90
- 24,702
- L90
- 19
- N95
- 16,211
- L95
- 24
- %GC
- 53.43
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,294
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_40_2_0_1_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL128
- Clonal group
- ClG128
- Genetic cluster
- GC54
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 17 (10 isolates) | SL: 128 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 341 (8 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 17 (10 isolates) | SL: 128 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 341 (8 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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