Full information on isolate FRC1196 (id:1490)
Projects
Provenance/primary metadata
- id
- 1490
- isolate
- FRC1196
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2021
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- Penis
- infection or disease
- Cutaneous ulcer
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- embargo history
- show details
- date entered
- 2021-11-22
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 37
- total length
- 2,366,729 bp
- max length
- 384,070 bp
- mean length
- 63,966 bp
- N50
- 102,953
- L50
- 8
- N90
- 36,745
- L90
- 21
- N95
- 25,749
- L95
- 25
- %GC
- 53.45
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,309
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_19_4_9_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL32
- Clonal group
- ClG32
- Genetic cluster
- GC744
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: