Full information on isolate FRC1167 (id:1456)
Projects
Provenance/primary metadata
- id
- 1456
- isolate
- FRC1167
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2021
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- not documented
- host
- Human
- source
- Respiratory expectoration
- infection or disease
- Pneumatope
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- embargo history
- show details
- date entered
- 2021-09-06
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 30
- total length
- 2,361,629 bp
- max length
- 424,428 bp
- mean length
- 78,721 bp
- N50
- 277,782
- L50
- 4
- N90
- 46,139
- L90
- 11
- N95
- 24,613
- L95
- 14
- %GC
- 53.43
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,298
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_42_0_1_2_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL80
- Clonal group
- ClG80
- Genetic cluster
- GC91
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 19 (4 isolates) | SL: 508 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 19 (3 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 19 (4 isolates) | SL: 508 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 19 (3 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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