Full information on isolate 280-87 (id:1452)
Projects
Provenance/primary metadata
- id
- 1452
- isolate
- 280-87
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 1987
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- not documented
- host
- Human
- source
- Thrombus
- infection or disease
- Thrombus
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 8 updates show details
- embargo history
- show details
- date entered
- 2021-09-06
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 51
- total length
- 2,389,580 bp
- max length
- 303,543 bp
- mean length
- 46,855 bp
- N50
- 103,897
- L50
- 9
- N90
- 25,772
- L90
- 23
- N95
- 14,994
- L95
- 29
- %GC
- 53.47
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,293
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_40_0_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL128
- Clonal group
- ClG10008
- Genetic cluster
- GC743
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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