Full information on isolate FRC1143 (id:1440)
Projects
Provenance/primary metadata
- id
- 1440
- isolate
- FRC1143
- species
- C. diphtheriae
- biovar
- Gravis
- tox gene PCR
- Negative
- isolation year
- 2021
- country
- Mayotte
- continent
- Africa
- state or locality
- Mayotte
- travel history
- not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Wound
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- embargo history
- show details
- date entered
- 2021-08-04
- datestamp
- 2025-07-17
Sequence bin
- method
- Unknown
- contigs
- 53
- total length
- 2,381,940 bp
- max length
- 252,779 bp
- mean length
- 44,943 bp
- N50
- 103,094
- L50
- 8
- N90
- 25,741
- L90
- 29
- N95
- 14,980
- L95
- 35
- %GC
- 53.51
- Ns
- 17
- gaps
- 2
- loci tagged
- 1,297
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_58_3_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL503
- Clonal group
- ClG785
- Genetic cluster
- GC206
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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