Full information on isolate PC0105 (id:1302)

Projects

This isolate is a member of the following projects:

SL453 study in 2022
See Arcari et al. Microbial Genomics 2023 (IDs 2315 and 2336 were added after publication)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
1302
isolate
PC0105
species
C. diphtheriae
biovar
Mitis
tox production Elek
Negative
isolation year
1997
country
Russia
continent
Asia
travel history
None
host
Human
accession number
SAMN13343854
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
1303 updates show details
date entered
2021-04-08
datestamp
2025-07-18

Publications (2)

  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
  • Xiaoli L, Benoliel E, Peng Y, Aneke J, Cassiday PK, Kay M, McKeirnan S, Duchin JS, Kawakami V, Lindquist S, Acosta AM, DeBolt C, Tondella ML, Weigand MR (2020). Genomic epidemiology of nontoxigenic Corynebacterium diphtheriae from King County, Washington State, USA between July 2018 and May 2019. Microb Genom 6:

Sequence bin

method
Illumina
contigs
36
total length
2,491,024 bp
max length
450,521 bp
mean length
69,196 bp
N50
223,319
L50
5
N90
96,530
L90
11
N95
43,743
L95
13
%GC
53.55
Ns
0
gaps
0
loci tagged
1,304

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_165_8_0_3_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL40
Clonal group
ClG40
Genetic cluster
GC60

Show all thresholds

PrefixThresholdMatching isolates
0_0_165_8_0_381
0_0_165_8_0_3_041
0_0_165_8_0_3_0_021
0_0_165_8_0_3_0_0_011
0_0_165_8_0_3_0_0_0_001
012202380
0_010352162
0_0_16550035
0_0_165_85510
0_0_165_8_0258
0_0_165_8_0_381
0_0_165_8_0_3_041
0_0_165_8_0_3_0_021
0_0_165_8_0_3_0_0_011
0_0_165_8_0_3_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
Genomic_clustercgMLSTSingle-linkage25experimental147 (7 isolates)
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
Genomic_clustercgMLSTSingle-linkage25experimental147 (7 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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