Full information on isolate PC0105 (id:1302)
Projects
Provenance/primary metadata
- id
- 1302
- isolate
- PC0105
- species
- C. diphtheriae
- biovar
- Mitis
- tox production Elek
- Negative
- isolation year
- 1997
- country
- Russia
- continent
- Asia
- travel history
- None
- host
- Human
- accession number
- SAMN13343854
- sender
- Julien Guglielmini, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 1303 updates show details
- date entered
- 2021-04-08
- datestamp
- 2025-07-18
Publications (2)
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Xiaoli L, Benoliel E, Peng Y, Aneke J, Cassiday PK, Kay M, McKeirnan S, Duchin JS, Kawakami V, Lindquist S, Acosta AM, DeBolt C, Tondella ML, Weigand MR (2020). Genomic epidemiology of nontoxigenic Corynebacterium diphtheriae from King County, Washington State, USA between July 2018 and May 2019. Microb Genom 6:
Sequence bin
- method
- Illumina
- contigs
- 36
- total length
- 2,491,024 bp
- max length
- 450,521 bp
- mean length
- 69,196 bp
- N50
- 223,319
- L50
- 5
- N90
- 96,530
- L90
- 11
- N95
- 43,743
- L95
- 13
- %GC
- 53.55
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,304
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_165_8_0_3_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL40
- Clonal group
- ClG40
- Genetic cluster
- GC60
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 21 (34 isolates) | SL: 453 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 147 (7 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 21 (34 isolates) | SL: 453 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 147 (7 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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