Full information on isolate PC0110 (id:1273)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
1273
isolate
PC0110
species
C. diphtheriae
biovar
Belfanti
tox production Elek
Negative
isolation year
1998
country
Canada
continent
North America
travel history
None
host
Human
accession number
SAMN13343856
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
1306 updates show details
date entered
2021-04-08
datestamp
2025-07-18

Publications (2)

  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
  • Xiaoli L, Benoliel E, Peng Y, Aneke J, Cassiday PK, Kay M, McKeirnan S, Duchin JS, Kawakami V, Lindquist S, Acosta AM, DeBolt C, Tondella ML, Weigand MR (2020). Genomic epidemiology of nontoxigenic Corynebacterium diphtheriae from King County, Washington State, USA between July 2018 and May 2019. Microb Genom 6:

Sequence bin

method
Illumina
contigs
41
total length
2,415,950 bp
max length
279,892 bp
mean length
58,926 bp
N50
128,385
L50
7
N90
42,856
L90
17
N95
24,665
L95
21
%GC
53.49
Ns
0
gaps
0
loci tagged
1,302

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_168_1_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL26
Clonal group
ClG10187
Genetic cluster
GC663

Show all thresholds

PrefixThresholdMatching isolates
0_0_168_1_0_081
0_0_168_1_0_0_041
0_0_168_1_0_0_0_021
0_0_168_1_0_0_0_0_011
0_0_168_1_0_0_0_0_0_001
012202380
0_010352162
0_0_16850050
0_0_168_1551
0_0_168_1_0251
0_0_168_1_0_081
0_0_168_1_0_0_041
0_0_168_1_0_0_0_021
0_0_168_1_0_0_0_0_011
0_0_168_1_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental4 (50 isolates)
SL: 26
SublineagecgMLSTSingle-linkage500experimental4 (50 isolates)
SL: 26
Genomic_clustercgMLSTSingle-linkage25experimental628 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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