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Full information on isolate 13-15 (id:1268)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
1268
isolate
13-15
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Negative
isolation year
2015
country
Austria
continent
Europe
travel history
None
host
Human
source
wound
infection or disease
Wound
comments
ST503
accession number
GCF_015830115.1
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
1297 updates show details
date entered
2021-04-08
datestamp
2025-07-17

Publications (2)

  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
  • Schaeffer J, Huhulescu S, Stoeger A, Allerberger F, Ruppitsch W (2021). Assessing the Genetic Diversity of Austrian Corynebacterium diphtheriae Clinical Isolates, 2011 to 2019. J Clin Microbiol 59:

Sequence bin

method
Illumina
contigs
66
total length
2,384,115 bp
max length
342,246 bp
mean length
36,123 bp
N50
112,858
L50
7
N90
32,244
L90
22
N95
22,098
L95
26
%GC
53.40
Ns
0
gaps
0
loci tagged
1,300

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_58_0_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL503
Clonal group
ClG503
Genetic cluster
GC194

Show all thresholds

PrefixThresholdMatching isolates
0_0_58_0_0_082
0_0_58_0_0_0_041
0_0_58_0_0_0_0_021
0_0_58_0_0_0_0_0_011
0_0_58_0_0_0_0_0_0_001
012202380
0_010352162
0_0_585007
0_0_58_0553
0_0_58_0_0252
0_0_58_0_0_082
0_0_58_0_0_0_041
0_0_58_0_0_0_0_021
0_0_58_0_0_0_0_0_011
0_0_58_0_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental3 (7 isolates)
SL: 502
Genomic_clustercgMLSTSingle-linkage25experimental3 (2 isolates)
SublineagecgMLSTSingle-linkage500experimental3 (7 isolates)
SL: 502
Genomic_clustercgMLSTSingle-linkage25experimental3 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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