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Full information on isolate FRC0205 (id:126)

Projects

This isolate is a member of the following projects:

ResistanceGenomics
Hennart et al. 247 isolates dataset
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
126
isolate
FRC0205
species
C. diphtheriae
biovar
Mitis
tox gene PCR
Negative
isolation year
2014
country
France
continent
Europe
state or locality
Mainland France
travel history
None
host
Human
source
Not documented
infection or disease
Wound
accession number
ERS4330889
sender
Marina Barros, Institut Pasteur
curator
Auto Tagger
update history
1340 updates show details
date entered
2017-02-13
datestamp
2025-07-18

Publication (1)

  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
38
total length
2,364,862 bp
max length
310,181 bp
mean length
62,234 bp
N50
178,743
L50
5
N90
37,438
L90
16
N95
21,785
L95
21
%GC
53.62
Ns
0
gaps
0
loci tagged
1,407

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_1_1_2_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_1
Sublineage
SL356
Clonal group
ClG356
Genetic cluster
GC240

Show all thresholds

PrefixThresholdMatching isolates
0_1_1_2_0_082
0_1_1_2_0_0_042
0_1_1_2_0_0_0_022
0_1_1_2_0_0_0_0_012
0_1_1_2_0_0_0_0_0_002
012202380
0_1103524
0_1_15004
0_1_1_2552
0_1_1_2_0252
0_1_1_2_0_082
0_1_1_2_0_0_042
0_1_1_2_0_0_0_022
0_1_1_2_0_0_0_0_012
0_1_1_2_0_0_0_0_0_002

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental72 (4 isolates)
SL: 356
Genomic_clustercgMLSTSingle-linkage25experimental95 (2 isolates)
SublineagecgMLSTSingle-linkage500experimental72 (4 isolates)
SL: 356
Genomic_clustercgMLSTSingle-linkage25experimental95 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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