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Full information on isolate 08-14 (id:1224)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
1224
isolate
08-14
species
C. diphtheriae
biovar
Gravis
tox gene PCR
Negative
isolation year
2014
country
Austria
continent
Europe
travel history
None
host
Human
source
wound
infection or disease
Infected wound
comments
ST295
accession number
GCF_015831045.1
sender
Julien Guglielmini, Institut Pasteur, France
curator
Auto Tagger
update history
1312 updates show details
date entered
2021-04-08
datestamp
2025-07-17

Publications (2)

  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
  • Schaeffer J, Huhulescu S, Stoeger A, Allerberger F, Ruppitsch W (2021). Assessing the Genetic Diversity of Austrian Corynebacterium diphtheriae Clinical Isolates, 2011 to 2019. J Clin Microbiol 59:

Sequence bin

method
Illumina
contigs
25
total length
2,584,983 bp
max length
481,424 bp
mean length
103,400 bp
N50
254,950
L50
4
N90
61,924
L90
11
N95
53,748
L95
13
%GC
53.54
Ns
0
gaps
0
loci tagged
1,310

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_209_0_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL295
Clonal group
ClG295
Genetic cluster
GC143

Show all thresholds

PrefixThresholdMatching isolates
0_0_209_0_0_081
0_0_209_0_0_0_041
0_0_209_0_0_0_0_021
0_0_209_0_0_0_0_0_011
0_0_209_0_0_0_0_0_0_001
012202380
0_010352162
0_0_20950014
0_0_209_0556
0_0_209_0_0253
0_0_209_0_0_081
0_0_209_0_0_0_041
0_0_209_0_0_0_0_021
0_0_209_0_0_0_0_0_011
0_0_209_0_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental41 (13 isolates)
SL: 295
Genomic_clustercgMLSTSingle-linkage25experimental303 (3 isolates)
SublineagecgMLSTSingle-linkage500experimental41 (13 isolates)
SL: 295
Genomic_clustercgMLSTSingle-linkage25experimental303 (3 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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