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Full information on isolate FRC0114 (id:120)

Projects

This isolate is a member of the following projects:

ResistanceGenomics: Hennart et al. 247 isolates dataset
Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id: 120
isolate: FRC0114
species: C. diphtheriae
biovar: Mitis
tox gene PCR: Positive
tox production Elek: Negative
isolation year: 2012
country: Mayotte
continent: Africa
state or locality: Mayotte
travel history: None
host: Human
source: Not documented
infection or disease: Wound
accession number: ERS4330866
sender: Marina Barros, Institut Pasteur
curator: Auto Tagger
update history: 1349 updates show details
date entered: 2017-02-13
datestamp: 2025-07-18

Publication (1)

Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method: Illumina
contigs: 35
total length: 2,502,848 bp
max length: 277,629 bp
mean length: 71,510 bp
N50: 190,970
L50: 6
N90: 32,678
L90: 17
N95: 29,326
L95: 21
%GC: 53.59
Ns: 10
gaps: 1
loci tagged: 1,411

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Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme: cgMLST
LIN code: 0_0_127_7_0_0_1_0_0_0
Species: C. diphtheriae
Lineage: 0_0
Sublineage: SL91
Clonal group: ClG238
Genetic cluster: GC80

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Prefix	Threshold	Matching isolates
0_0_127_7_0_0	8	3
0_0_127_7_0_0_1	4	1
0_0_127_7_0_0_1_0	2	1
0_0_127_7_0_0_1_0_0	1	1
0_0_127_7_0_0_1_0_0_0	0	1
0	1220	2380
0_0	1035	2162
0_0_127	500	20
0_0_127_7	55	5
0_0_127_7_0	25	5
0_0_127_7_0_0	8	3
0_0_127_7_0_0_1	4	1
0_0_127_7_0_0_1_0	2	1
0_0_127_7_0_0_1_0_0	1	1
0_0_127_7_0_0_1_0_0_0	0	1

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	69 (20 isolates)	SL: 91
Genomic_cluster	cgMLST	Single-linkage	25	experimental	90 (5 isolates)
Sublineage	cgMLST	Single-linkage	500	experimental	69 (20 isolates)	SL: 91
Genomic_cluster	cgMLST	Single-linkage	25	experimental	90 (5 isolates)

Schemes and loci

All loci

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