Full information on isolate FRC0019 (id:12)
Projects
This isolate is a member of the following project:
- cgMLST set-up study
- Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Provenance/primary metadata
- id
- 12
- isolate
- FRC0019
- species
- C. belfantii
- biovar
- Belfanti
- tox gene PCR
- Negative
- tox production Elek
- Negative
- isolation year
- 2008
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- respiratory
- infection or disease
- Not documented
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1331 updates show details
- embargo history
- show details
- date entered
- 2017-01-31
- datestamp
- 2025-07-18
- outbreak or sporadic
- Cluster
Publication (1)
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 168
- total length
- 2,745,989 bp
- max length
- 126,579 bp
- mean length
- 16,346 bp
- N50
- 34,897
- L50
- 24
- N90
- 10,349
- L90
- 79
- N95
- 5,998
- L95
- 96
- %GC
- 53.74
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,384
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 2_0_3_19_0_0_0_0_0_0
- Species
- C. belfantii
- Lineage
- 2_0
- Sublineage
- SL92
- Clonal group
- ClG92
- Genetic cluster
- GC20
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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