Full information on isolate FRC1065 (id:1199)
Projects (2)
This isolate is a member of the following projects:
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
DelgadoBlas_LINcodes_2025 public
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.
1,665 isolates
Provenance/primary metadata
- id
- 1199
- isolate
- FRC1065
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2020
- country
- Réunion
- continent
- Africa
- state or locality
- La Reunion
- travel history
- None
- host
- Human
- source
- ORL
- infection or disease
- Wound
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 8 updates show details
- embargo history
- show details
- date entered
- 2021-03-19
- datestamp
- 2025-04-30
Sequence bin
- method
- Unknown
- contigs
- 46
- total length
- 2,384,709 bp
- max length
- 275,085 bp
- mean length
- 51,842 bp
- N50
- 128,183
- L50
- 7
- N90
- 30,859
- L90
- 24
- N95
- 17,844
- L95
- 29
- %GC
- 53.58
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,310
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_1_0_1_0_0_1_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_1
- Sublineage
- SL88
- Clonal group
- ClG88
- Genetic cluster
- GC36
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 60 (20 isolates) | SL: 88 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 490 (11 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 60 (20 isolates) | SL: 88 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 490 (11 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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