Full information on isolate FRC0074 (id:11)
Projects
This isolate is a member of the following project:
- cgMLST set-up study
- Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Provenance/primary metadata
- id
- 11
- isolate
- FRC0074
- species
- C. belfantii
- biovar
- Belfanti
- tox gene PCR
- Negative
- tox production Elek
- Negative
- isolation year
- 2011
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- respiratory
- infection or disease
- Not documented
- comments
- Cystic fibrosis
- accession number
- ERR2757916
- epidemic cluster
- Dijon CF center cluster
- sender
- Melody Dazas, Institut Pasteur
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 1338 updates show details
- embargo history
- show details
- date entered
- 2017-01-31
- datestamp
- 2025-04-30
- outbreak or sporadic
- Cluster
Publications (3)
- Dazas M, Badell E, Carmi-Leroy A, Criscuolo A, Brisse S (2018). Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov. Int J Syst Evol Microbiol 68:3826-3831
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Pivot D, Fanton A, Badell-Ocando E, Benouachkou M, Astruc K, Huet F, Amoureux L, Neuwirth C, Criscuolo A, Aho S, Toubiana J, Brisse S (2019). Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis. J Clin Microbiol 57:
Sequence bin
- method
- Unknown
- contigs
- 159
- total length
- 2,642,382 bp
- max length
- 100,808 bp
- mean length
- 16,619 bp
- N50
- 35,757
- L50
- 24
- N90
- 10,967
- L90
- 77
- N95
- 7,038
- L95
- 92
- %GC
- 53.67
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,382
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 2_0_33_0_0_2_0_0_0_0
- Species
- C. belfantii
- Lineage
- 2_0
- Sublineage
- SL208
- Clonal group
- ClG208
- Genetic cluster
- GC15
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 11 (7 isolates) | SL: 208 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 11 (5 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 11 (7 isolates) | SL: 208 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 11 (5 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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