Full information on isolate FRC0880 (id:1069)
Projects (2)
This isolate is a member of the following projects:
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
DelgadoBlas_LINcodes_2025 public
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.
1,665 isolates
Provenance/primary metadata
- id
- 1069
- isolate
- FRC0880
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2020
- country
- Mayotte
- continent
- Africa
- state or locality
- Mayotte
- travel history
- Not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 14 updates show details
- embargo history
- show details
- date entered
- 2020-11-25
- datestamp
- 2025-04-30
Sequence bin
- method
- Unknown
- contigs
- 36
- total length
- 2,451,026 bp
- max length
- 409,024 bp
- mean length
- 68,085 bp
- N50
- 142,845
- L50
- 5
- N90
- 44,211
- L90
- 17
- N95
- 30,862
- L95
- 20
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,309
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_1_0_2_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_1
- Sublineage
- SL88
- Clonal group
- ClG10093
- Genetic cluster
- GC736
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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