Full information on isolate FRC0831 (id:1047)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
1047
isolate
FRC0831
species
C. diphtheriae
biovar
Mitis
tox gene PCR
Negative
isolation year
2019
country
France
continent
Europe
state or locality
Mainland France
travel history
Not documented
host
Human
source
Cutaneous
infection or disease
Wound
sender
Sylvain Brisse
curator
Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
update history
12 updates show details
date entered
2020-09-07
datestamp
2025-04-30

Sequence bin

method
Unknown
contigs
57
total length
2,396,759 bp
max length
202,369 bp
mean length
42,049 bp
N50
109,997
L50
9
N90
36,350
L90
26
N95
18,331
L95
30
%GC
53.61
Ns
0
gaps
0
loci tagged
1,298

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_197_9_1_9_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL5
Clonal group
ClG5
Genetic cluster
GC23

Show all thresholds

PrefixThresholdMatching isolates
0_0_197_9_1_981
0_0_197_9_1_9_041
0_0_197_9_1_9_0_021
0_0_197_9_1_9_0_0_011
0_0_197_9_1_9_0_0_0_001
012202242
0_010352024
0_0_19750055
0_0_197_95534
0_0_197_9_12519
0_0_197_9_1_981
0_0_197_9_1_9_041
0_0_197_9_1_9_0_021
0_0_197_9_1_9_0_0_011
0_0_197_9_1_9_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental150 (17 isolates)
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental150 (17 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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