Full information on isolate FRC0831 (id:1047)
Projects
Provenance/primary metadata
- id
- 1047
- isolate
- FRC0831
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2019
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Wound
- sender
- Sylvain Brisse
- curator
- Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
- update history
- 12 updates show details
- date entered
- 2020-09-07
- datestamp
- 2025-04-30
Sequence bin
- method
- Unknown
- contigs
- 57
- total length
- 2,396,759 bp
- max length
- 202,369 bp
- mean length
- 42,049 bp
- N50
- 109,997
- L50
- 9
- N90
- 36,350
- L90
- 26
- N95
- 18,331
- L95
- 30
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,298
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_9_1_9_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG5
- Genetic cluster
- GC23
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 24 (53 isolates) | SL: 5 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 150 (17 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 24 (53 isolates) | SL: 5 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 150 (17 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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