Full information on isolate FRC0764 (id:1012)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
1012
isolate
FRC0764
species
C. diphtheriae
biovar
Belfanti
tox gene PCR
Negative
isolation year
2019
country
France
continent
Europe
state or locality
Mainland France
travel history
Not documented
host
Human
source
Cutaneous
infection or disease
Not documented
sender
Sylvain Brisse
curator
Sylvain Brisse, Institut Pasteur, Paris, France (E-mail: sylvain.brisse@pasteur.fr)
update history
12 updates show details
date entered
2020-09-07
datestamp
2025-04-30

Sequence bin

method
Unknown
contigs
58
total length
2,394,867 bp
max length
205,708 bp
mean length
41,291 bp
N50
100,477
L50
9
N90
30,037
L90
26
N95
18,265
L95
32
%GC
53.61
Ns
0
gaps
0
loci tagged
1,297

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_197_9_1_8_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL5
Clonal group
ClG5
Genetic cluster
GC23

Show all thresholds

PrefixThresholdMatching isolates
0_0_197_9_1_886
0_0_197_9_1_8_041
0_0_197_9_1_8_0_021
0_0_197_9_1_8_0_0_011
0_0_197_9_1_8_0_0_0_001
012202242
0_010352024
0_0_19750055
0_0_197_95534
0_0_197_9_12519
0_0_197_9_1_886
0_0_197_9_1_8_041
0_0_197_9_1_8_0_021
0_0_197_9_1_8_0_0_011
0_0_197_9_1_8_0_0_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental150 (17 isolates)
SublineagecgMLSTSingle-linkage500experimental24 (53 isolates)
SL: 5
Genomic_clustercgMLSTSingle-linkage25experimental150 (17 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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