Full information on isolate FRC0223 (id:10)
Projects
This isolate is a member of the following project:
- cgMLST set-up study
- Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Provenance/primary metadata
- id
- 10
- isolate
- FRC0223
- species
- C. belfantii
- biovar
- Belfanti
- tox gene PCR
- Negative
- isolation year
- 2014
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Not documented
- host
- Human
- source
- respiratory
- infection or disease
- Sinusitis
- accession number
- ERR2757917
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1329 updates show details
- embargo history
- show details
- date entered
- 2017-01-31
- datestamp
- 2025-07-18
- outbreak or sporadic
- Sporadic
Publications (3)
- Dazas M, Badell E, Carmi-Leroy A, Criscuolo A, Brisse S (2018). Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov. Int J Syst Evol Microbiol 68:3826-3831
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Pivot D, Fanton A, Badell-Ocando E, Benouachkou M, Astruc K, Huet F, Amoureux L, Neuwirth C, Criscuolo A, Aho S, Toubiana J, Brisse S (2019). Carriage of a Single Strain of Nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in Four Patients with Cystic Fibrosis. J Clin Microbiol 57:
Sequence bin
- method
- Unknown
- contigs
- 185
- total length
- 2,765,539 bp
- max length
- 90,049 bp
- mean length
- 14,949 bp
- N50
- 33,077
- L50
- 25
- N90
- 8,432
- L90
- 87
- N95
- 5,354
- L95
- 108
- %GC
- 53.74
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,379
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 2_0_54_2_0_0_0_0_0_0
- Species
- C. belfantii
- Lineage
- 2_0
- Sublineage
- SL365
- Clonal group
- ClG365
- Genetic cluster
- GC901
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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