Search or browse database
29 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.
Isolate fields | cgMLST | cgMLST_ulcerans | MLST | Ribosomal MLST | tox | ||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
id | isolate | aliases | duplicate number | species | biovar | tox gene PCR | tox production Elek | country | travel history | host | source | infection or disease | other source info | resistance info | accession number | cgST | LINcode | Species | Lineage | Sublineage | Clonal group | Genetic cluster | cgST | atpA | dnaE | dnaK | fusA | leuA | odhA | rpoB | ST | clonal complex | rST | species | subspecies | TT | prediction |
1572 | 45236 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 3074 | 0_0_182_0_0_3_0_1_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1573 | 45238 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 887 | 0_0_182_0_0_4_2_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1574 | 45461 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | asymptomatic carrier | 3075 | 0_0_182_0_0_5_0_0_0_1 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1575 | 45463 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | tracheal aspirate | respiratory diphtheria | 3076 | 0_0_182_0_0_5_0_0_0_2 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1576 | 45462 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | asymptomatic carrier | 821 | 0_0_182_0_0_5_0_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1577 | 45464 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 755 | 0_0_182_0_0_3_1_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1578 | 45465 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 811 | 0_0_182_0_0_4_1_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1579 | 45466 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | tonsil | respiratory diphtheria | 818 | 0_0_182_0_0_4_0_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1580 | 45903 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | tonsil | respiratory diphtheria | 3077 | 0_0_182_0_0_3_0_0_1_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1581 | 45785 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 773 | 0_0_182_0_0_6_0_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1582 | 45786 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | asymptomatic carrier | 889 | 0_0_182_0_0_3_0_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1583 | 45787 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 3078 | 0_0_182_0_0_2_0_0_1_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1584 | 45788 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 3079 | 0_0_182_0_0_2_0_0_3_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1585 | 45789 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | asymptomatic carrier | 890,3082 | 0_0_182_0_0_0_0_0_1_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1586 | 45790 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | asymptomatic carrier | 880 | 0_0_182_0_0_0_0_0_2_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1587 | 45791 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | asymptomatic carrier | 847,3122 | 0_0_182_0_0_0_0_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
1588 | 45902 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 821 | 0_0_182_0_0_5_0_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
3869 | 48347 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | tonsil | respiratory diphtheria | 778 | 0_0_182_0_0_1_0_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
3870 | 48412 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 3131 | 0_0_182_0_0_1_0_0_0_1 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
3872 | 52373 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 3133 | 0_0_182_0_0_1_1_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
3873 | 52323 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | respiratory diphtheria | 3134 | 0_0_182_0_0_1_1_0_0_1 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
3874 | 52333 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | nasopharynx | respiratory diphtheria | 3133 | 0_0_182_0_0_1_1_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
3877 | 54986 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | tonsil abscess | respiratory diphtheria | 3137 | 0_0_182_0_0_1_0_1_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
3878 | 55054 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | tonsil abscess | respiratory diphtheria | 3138 | 0_0_182_0_0_1_3_0_0_0 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) | |||||||||||
3879 | 55112 | C. diphtheriae | Positive | Positive | South Africa | unknown | Human | throat | asymptomatic carrier | 3139 | 0_0_182_0_0_1_3_0_0_1 | C. diphtheriae | L377 | SL378 | CG378 | GC378 | 3 | 8 | 4 | 7 | 3 | 4 | 3 | 378 | 6 | toxigenic (diphtheriae) |
Analysis tools
Breakdown:
Analysis:
Export:
Third party: