ISO 9001: We are pleased to announce that the BIGSdb-Pasteur platform has obtained ISO9001 certification in March 2026, and has been included in the scope of the CRBIP ISO 9001:2015 certification.
Whole genome sequencing data requirements
Submitted genomes or assemblies must meet both sets of quality requirements:
- those related to the sequencing technology. Assemblies must be generated using an accepted technology and comply with its associated quality standards, see Technologies accepted.
- those specific to the bacterial group
Please refer to the assembly metrics below:
| Species | Size of genome | Number of contigs | C+G% | Coverage |
|---|---|---|---|---|
| B. bronchiseptica | 5 000 000 - 5 600 000 | ≤ 500 | 67.8 - 68.7 | >= 40 |
| B. holmesii | 3 400 000 - 3 800 000 | ≤ 500 | 62.6 - 62.9 | >= 40 |
| B. parapertussis | 4 400 000 - 4 900 000 | ≤ 500 | 67.7 - 68.2 | >= 40 |
| B. pertussis | 3 300 000 - 4 100 000 | ≤ 500 | 67.1 - 68.1 | >= 40 |
| other | 3 700 000 - 5 900 000 | ≤ 500 | 59.4 - 69 | >= 40 |