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Bordetella
© Images : Institut Pasteur/Pierre Gounon & © Design : Institut Pasteur

This page provides access to genotypic data for Bordetella isolates based on Multilocus Sequence Typing (MLST) and core genome MLST (cgMLST). See references for more details.

bordetellaMLST@pasteur.fr

The BIGSdb website Policy concerning the platform & data use agreement and the privacy notice of BIGSdb-Pasteur was updated on March 25, 2024. Please consult it before using the platform and the data.

The procedure for submitting data for curation were updated on Mai 03, 2024. Please consult them before making a new submission. If any questions, contact us.

Alleles & profiles database
The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).
Isolates & genomes database
The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.
Data submission
Before contacting the curators, please download and read carefully the files below:
Submission of data for curation
Quality criteria for whole genome assembly
Infographic
Template for Bordetella genomes

We appreciate if you can recognize our efforts in the acknowledgments section of your publications:

We thank the Institut Pasteur teams for the curation and maintenance of BIGSdb-Pasteur databases at https://bigsdb.pasteur.fr/.

Curators access
Data Curation is performed on a voluntary basis and is based on a community effort.
Sequences and Profiles
Isolates
Other Information
BIGSdb manual
Primers used for amplification and sequencing (MLST)
Overlapping loci
Edit on GitLab