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Elizabethkingia
© Images : Institut Pasteur/Sylvain Brisse et Nadège Cayet. Colorisation Jean-Marc Panaud & © Design : Institut Pasteur

This page provides access to genotypic data for E. anophelis, E. meningoseptica and E. miricola isolates based on core genome MLST (cgMLST). See references for more details.

elizabethkingiaMLST@pasteur.fr

⛔ Maintenance: A BIGSdb-Pasteur maintenance is scheduled on Friday, July 04th and Saturday, July 05th. All services will be offline until late in the evening (Central European Time). During this period, the server and API will be unavailable. Please note that job submission not be available and all unfinished jobs will be killed. Sorry for any inconvenience. If any questions, contact us

Data access policy note: since January 1st, 2025, registration and authentication are mandatory to access all data curated after this date, either via the web interface or via the application programming interface (API authentication help link). Please contact us if you have any questions.

Alleles & profiles database
The typing database contains nomenclature - allele definitions that provide an identifier for every unique allele sequence, and MLST profiles that index each unique combination of alleles with a sequence type (ST).
Isolates & genomes database
The isolate database consists of isolate records containing provenance and phenotype information linked to molecular typing information. These records may also include genome assemblies.
Data submission
Before contacting the curators, please download and read carefully the files below:
Submission of data for curation
Quality criteria for whole genome assembly
Metadata fields description
Infographic
Template for Elizabethkingia isolates

We appreciate if you can recognize our efforts in the acknowledgments section of your publications:

We thank the Institut Pasteur teams for the curation and maintenance of BIGSdb-Pasteur databases at https://bigsdb.pasteur.fr/.

Curators access
Data Curation is performed on a voluntary basis and is based on a community effort.
Sequences and Profiles
Isolates
Other Information
BIGSdb manual
Edit on GitLab