A BIGSdb-Pasteur maintenance is scheduled starting on Monday, Feb 13th at noon. All services will be offline till Tuesday, Feb 14th afternoon at least. During this period, the server and API will be unavailable. Please note that the job submission will be stopped and all unfinished jobs will be killed at 10am on Monday the 13th. Sorry for any inconvenience. If any questions, contact us
Hennart et al. preprint has been published on bioRxiv!A dual barcoding approach to bacterial strain nomenclature: Genomic taxonomy of Klebsiella pneumoniae -
A proposal to build genomic taxonomies of bacterial strains using a dual approach combining single linkage clustering and life identification numbers into a single cgMLST-based multilevel classification system.
Here, the 634-loci strict core genome MLST (scgMLSTv1) initially identified in Bialek-Davenet et al, 2014 was reassessed, and an improved cgMLST scheme of 629-loci (scgMLST629_S) for K. pneumoniae Species Complex genotyping was provided.
This Hennart et al. 629-loci cgMLST scheme has been incorporated into the BIGSdb-Klebsiella nomenclature server.