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Full information on isolate NCK_SE0004 (id:59)

Provenance/primary metadata

id
59
isolate
NCK_SE0004
isolation year
2014
world region
Europe
country
France
city
Paris
host
Human
neonate
no
other strain info
ST5
source
Blood
infection
Infection
other infection info
central line blood
MSSE MRSE
MRSE
sender
Anne Jamet, INSERM
curator
Auto Tagger
update history
6 updates show details
date entered
2017-06-09
datestamp
2022-12-22

Sequence bin

contigs
160
total length
2,497,104 bp
max length
124,205 bp
mean length
15,607 bp
N50
46,479
L50
16
N90
11,794
L90
53
N95
7,731
L95
66
%GC
32.22
Ns
50
gaps
5
loci tagged
767

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Schemes and loci

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