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Full information on isolate NCK_SE0002 (id:54)

Provenance/primary metadata

id
54
isolate
NCK_SE0002
isolation year
2014
world region
Europe
country
France
city
Paris
host
Human
neonate
no
other strain info
ST2
source
Blood
infection
Infection
other infection info
central line blood
MSSE MRSE
MRSE
sender
Anne Jamet, INSERM
curator
Auto Tagger
update history
6 updates show details
date entered
2017-06-09
datestamp
2022-12-22

Sequence bin

contigs
186
total length
2,500,408 bp
max length
152,937 bp
mean length
13,444 bp
N50
38,780
L50
20
N90
9,429
L90
67
N95
5,512
L95
84
%GC
31.89
Ns
404
gaps
6
loci tagged
771

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Schemes and loci

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