Full information on isolate NCK_SE0016 (id:527)

Provenance/primary metadata

id
527
isolate
NCK_SE0016
isolation year
2015
world region
Europe
country
France
city
Paris
host
Human
neonate
yes
other strain info
ST5
source
Blood
infection
Infection
MSSE MRSE
MRSE
sender
Julien Guglielmini, Institut Pasteur
curator
Auto Tagger
update history
7 updates show details
date entered
2017-02-27
datestamp
2022-12-22

Sequence bin

contigs
279
total length
2,604,132 bp
max length
139,571 bp
mean length
9,334 bp
N50
43,446
L50
20
N90
11,118
L90
61
N95
6,259
L95
78
%GC
32.09
Ns
120
gaps
12
loci tagged
748

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Clustering-134cgMLSTSingle-linkage134experimental6 (41 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental6 (41 isolates)
Clustering-134cgMLSTSingle-linkage134experimental6 (41 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental6 (41 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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