Full information on isolate NCK_SE0028 (id:519)
Provenance/primary metadata
- id
- 519
- isolate
- NCK_SE0028
- isolation year
- 2016
- world region
- Europe
- country
- France
- city
- Paris
- host
- Human
- neonate
- yes
- other strain info
- ST22
- source
- Blood
- infection
- Infection
- other infection info
- peripheral blood
- MSSE MRSE
- MRSE
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2017-02-27
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 253
- total length
- 2,574,856 bp
- max length
- 253,224 bp
- mean length
- 10,178 bp
- N50
- 81,762
- L50
- 10
- N90
- 14,136
- L90
- 36
- N95
- 7,930
- L95
- 48
- %GC
- 32.14
- Ns
- 236
- gaps
- 2
- loci tagged
- 753
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 38 (45 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 40 (42 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 38 (45 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 40 (42 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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