Full information on isolate NCK_SE0026 (id:517)

Provenance/primary metadata

id
517
isolate
NCK_SE0026
isolation year
2016
world region
Europe
country
France
city
Paris
host
Human
neonate
no
other strain info
ST2
source
Blood
infection
Infection
MSSE MRSE
MRSE
sender
Julien Guglielmini, Institut Pasteur
curator
Auto Tagger
update history
8 updates show details
date entered
2017-02-27
datestamp
2022-12-22

Sequence bin

contigs
207
total length
2,648,967 bp
max length
200,391 bp
mean length
12,797 bp
N50
71,113
L50
12
N90
21,309
L90
36
N95
11,223
L95
45
%GC
31.93
Ns
87
gaps
1
loci tagged
757

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Clustering-134cgMLSTSingle-linkage134experimental19 (141 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental19 (128 isolates)
Clustering-134cgMLSTSingle-linkage134experimental19 (141 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental19 (128 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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