Full information on isolate NCK_SE0005 (id:511)

Provenance/primary metadata

id
511
isolate
NCK_SE0005
isolation year
2015
world region
Europe
country
France
city
Paris
host
Human
neonate
yes
other strain info
ST2
source
Blood
infection
Infection
MSSE MRSE
MRSE
sender
Julien Guglielmini, Institut Pasteur
curator
Auto Tagger
update history
7 updates show details
date entered
2017-02-27
datestamp
2022-12-22

Sequence bin

contigs
162
total length
2,551,694 bp
max length
284,073 bp
mean length
15,752 bp
N50
82,863
L50
10
N90
22,477
L90
30
N95
10,254
L95
39
%GC
32.02
Ns
0
gaps
0
loci tagged
753

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Staphylococcus epidermidis Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus > Staphylococcus epidermidis 100%

Analysis performed: 2022-12-27

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Clustering-134cgMLSTSingle-linkage134experimental19 (141 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental19 (128 isolates)
Clustering-134cgMLSTSingle-linkage134experimental19 (141 isolates)
Clustering-468cgMLSTSingle-linkage468experimental1 (417 isolates)
test-105cgMLSTSingle-linkage105experimental19 (128 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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