Full information on isolate NCK_SE0001 (id:510)
Provenance/primary metadata
- id
- 510
- isolate
- NCK_SE0001
- isolation year
- 2015
- world region
- Europe
- country
- France
- city
- Paris
- host
- Human
- neonate
- no
- source
- Skin
- infection
- Commensal
- MSSE MRSE
- MSSE
- sender
- Julien Guglielmini, Institut Pasteur
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2017-02-27
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 200
- total length
- 2,541,618 bp
- max length
- 255,978 bp
- mean length
- 12,709 bp
- N50
- 81,254
- L50
- 9
- N90
- 19,918
- L90
- 33
- N95
- 10,213
- L95
- 42
- %GC
- 31.98
- Ns
- 60
- gaps
- 1
- loci tagged
- 751
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 23 (8 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 23 (8 isolates) |
| Clustering-134 | cgMLST | Single-linkage | 134 | experimental | 23 (8 isolates) |
| Clustering-468 | cgMLST | Single-linkage | 468 | experimental | 1 (417 isolates) |
| test-105 | cgMLST | Single-linkage | 105 | experimental | 23 (8 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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