Full information on isolate SRR6816565 (id:75)

Projects

This isolate is a member of the following projects:

cgMLST set-up study: Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
Hennart_diphtOscan_2023_OtherIsolates: Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025: Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

id: 75
isolate: SRR6816565
alias: CD42
species: C. diphtheriae
biovar: Mitis
isolation year: 2015
country: Australia
continent: Oceania
travel history: Not documented
host: Human
source: Cutaneous (site unknown)
accession number: PRJNA436425
sender: Julien Guglielmini, Institut Pasteur, France
curator: Mélanie Hennart, Institut Pasteur, France (E-mail: melanie.hennart@orange.fr)
update history: 8 updates show details
date entered: 2020-01-10
datestamp: 2023-01-24

Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Timms VJ, Nguyen T, Crighton T, Yuen M, Sintchenko V (2018). Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains. BMC Genomics 19:869

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Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group	Fields
Sublineage	cgMLST	Single-linkage	500	experimental	24 (53 isolates)	SL: 5
Sublineage	cgMLST	Single-linkage	500	experimental	24 (53 isolates)	SL: 5
Genomic_cluster	cgMLST	Single-linkage	25	experimental	56 (1 isolate)

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