Full information on isolate c21 (id:56)
Projects (3)
This isolate is a member of the following projects:
cgMLST set-up study public
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
440 isolates
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
DelgadoBlas_LINcodes_2025 public
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.
1,665 isolates
Provenance/primary metadata
- id
- 56
- isolate
- c21
- alias
- ASM188990v1
- species
- C. diphtheriae
- isolation year
- 1981
- country
- Malaysia
- continent
- Asia
- travel history
- Not documented
- host
- Human
- accession number
- GCA_001889905.1
- epidemic cluster
- cryptic_8
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1323 updates show details
- embargo history
- show details
- date entered
- 2017-02-10
- datestamp
- 2025-07-18
Publications (2)
- Ahmad N, Hii SY, Mohd Khalid MK, Abd Wahab MA, Hashim R, Tang SN, Liow YL, Hamzah H, Dahalan NA, Seradja V (2017). First Draft Genome Sequences of Malaysian Clinical Isolates of Corynebacterium diphtheriae. Genome Announc 5:
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 40
- total length
- 2,500,797 bp
- max length
- 324,563 bp
- mean length
- 62,520 bp
- N50
- 103,815
- L50
- 6
- N90
- 49,883
- L90
- 19
- N95
- 29,306
- L95
- 22
- %GC
- 53.57
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,401
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_206_1_0_0_2_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL452
- Clonal group
- ClG452
- Genetic cluster
- GC82
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 22 (4 isolates) | SL: 452 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 22 (4 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 22 (4 isolates) | SL: 452 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 22 (4 isolates) |
Schemes and loci
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Tools
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